Publications

Books:

  • A.B. Shipunov, E.M. Baldin, P.A. Volkova, A.I. Korobeynikov, S.A. Nazarova,  S.V. Petrov, and V.G. Sufiyanov (2012, in Russian), "Visual Statistics. Using R!". DMK Press, Moscow. ISBN 978-5-94074-828-1.

    Published papers:

    • Matthew J Bertin, Alexandra Vulpanovici, Emily A Monroe, Anton Korobeynikov, David H Sherman, Lena Gerwick, William H Gerwick (2016), "The Phormidolide Biosynthetic Gene Cluster: A trans‐AT PKS Pathway Encoding a Toxic Macrocyclic Polyketide", ChemBioChem, 17(2), 164-173.
    • Dmitry Antipov, Anton Korobeynikov, Jeffrey S. MacLean, Pavel A. Pevzner (2015), "hybridSPAdes: an algorithm for hybrid assembly of short and long reads", Bioinformatics, btv688.
    • Nina Golyandina, Anton Korobeynikov, Alex Shlemov, Konstantin Usevich (2015), "Multivariate and 2D Extensions of Singular Spectrum Analysis with the Rssa Package", Journal of Statistical Software, 67(2), 1-78.
    • Irina Vasilinetc, Andrey D Prjibelski, Alexey Gurevich, Anton Korobeynikov, Pavel A Pevzner (2015), "Assembling short reads from jumping libraries with large insert sizes", Bioinformatics, 31(20), 3262-3268.
    • Karin Kleigrewe, Jehad Almaliti, Isaac Yuheng Tian, Robin B Kinnel, Anton Korobeynikov, Emily A Monroe, Brendan M Duggan, Vincenzo Di Marzo, David H Sherman, Pieter C Dorrestein, Lena Gerwick, William H Gerwick (2015), "Combining Mass Spectrometric Metabolic Profiling with Genomic Analysis: A Powerful Approach for Discovering Natural Products from Cyanobacteria", Journal of natural products, 78(7), 1671-1682
    • Paul D Boudreau, Emily A Monroe, Suneet Mehrotra, Shane Desfor, Anton Korobeynikov, David H Sherman, Thomas F Murray, Lena Gerwick, Pieter C Dorrestein, William H Gerwick (2015), "Expanding the Described Metabolome of the Marine Cyanobacterium Moorea producens JHB through Orthogonal Natural Products Workflows", PLoS One, 10(7), e0133297.
    • K Kleigrewe, J Almaliti, I Yuheng Tian, RB Kinnel, A Korobeynikov, EA Monroe, BM Duggan, V Di Marzo, DH Sherman, PC Dorrestein, L Gerwick, WH Gerwick (2015), "Discovery of novel chlorinated acyl amides from a marine cyanobacterium using integrated technologies", Planta Medica, 81(11), IL13.
    • Matthew J Bertin, Sarah L Schwartz, John Lee, Anton Korobeynikov, Pieter C Dorrestein, Lena Gerwick, William H Gerwick (2015), "Spongosine Production by a Vibrio harveyi Strain Associated with the Sponge Tectitethya crypta", Journal of natural products, 78(3), 493-499.
    • Nina Golyandina, Anton Korobeynikov, Alex Shlemov, Konstantin Usevich (2014), Multivariate and 2D Extensions of Singular Spectrum Analysis with the Rssa Package, arXiv:1309.5050
    • Andrey D Prjibelski, Irina Vasilinetc, Anton Bankevich, Alexey Gurevich, Tatiana Krivosheeva, Sergey Nurk, Son Pham, Anton Korobeynikov, Alla Lapidus, Pavel A Pevzner (2014), "ExSPAnder: a universal repeat resolver for DNA fragment assembly", Bioinformatics, 30(12), i293-i301.
    • R Cameron Coates, Sheila Podell, Anton Korobeynikov, Alla Lapidus, Pavel Pevzner, David H Sherman, Eric E Allen, Lena Gerwick, William H Gerwick (2014), "Characterization of cyanobacterial hydrocarbon composition and distribution of biosynthetic pathways", PLoS One, 9(1), e85140.
    • Rajat S Roy, Dana C Price, Alexander Schliep, Guohong Cai, Anton Korobeynikov, Hwan Su Yoon, Eun Chan Yang, Debashish Bhattacharya (2014), "Single cell genome analysis of an uncultured heterotrophic stramenopile", Nature Scientific Reports, 4, 4780.
    • Nina Golyandina, Anton Korobeynikov (2014), "Basic singular spectrum analysis and forecasting with R", Computational Statistics and Data Analysis, 71, 934-954.
    • Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A Gurevich, Anton Korobeynikov, Alla Lapidus, Andrey D Prjibelski, Alexey Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Scott R Clingenpeel, Tanja Woyke, Jeffrey S Mclean, Roger Lasken, Glenn Tesler, Max A Alekseyev, Pavel A Pevzner (2013), "Assembling single-cell genomes and mini-metagenomes from chimeric MDA products", Journal of Computational Biology, 20, 714-737.
    • Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey Gurevich, Anton Korobeynikov, Alla Lapidus, Andrey Prjibelsky, Alexey Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Jeffrey McLean, Roger Lasken, Scott R. Clingenpeel, Tanja Woyke, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner (2013), "Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads", LNCS, 7821, 158-170.
    • Sergey I. Nikolenko, Anton I. Korobeynikov, Max A. Alekseyev (2013), "BayesHammer: Bayesian Clustering for Error Correction in Single-Cell Sequencing", BMC Genomics, 14(Suppl 1):S7.
    • A. Korobeynikov (2012), "Consistency of Parametric MLE Under Mixed Case Interval Censoring", Communications in Statistics - Simulation and Computation, 41, 1083-1092.
    • A. Korobeynikov (2010), "Computation- and space-efficient implementation of SSA", Statistics and Its Interface", 3, 357-368.
    • A. Korobeynikov (2009), "Computation- and Space-Efficient Implementation of SSA". arXiv:0911.4498.
    • A. Korobeynikov (2009), "On the Consistency of ML-estimates for the Special Model of Survival Curves with Incomplete Data", In S.M. Ermakov, V.B. Melas, A.N. Pepelyshev: Proceeding of 6th St. Petersburg Workshop on Simulation, 1039-1045.
    • A.I. Korobeynikov (2009, in Russian), "Methods and computer programs in parameter estimation problems for special models of survival curves", In M.K. Chirkov (eds): Mathematical Models, Theory and Applications, 10, Saint Petersburg.
    • A.I. Korobeynikov (2009, in Russian), "Comparison of parameter estimates for one special models of survival curves for sample with interval censoring", Vestnik St. Petersburg University: Applied Mathematics, 2, 36-47.
    • M.A. Peshkova, A.I. Korobeynikov and K.N. Mikhelson (2008), "Estimation of ion-site association constants in ion-selective electrode membranes by modified segmented sandwich membrane method", Electrochimica Acta, 53, 5819-5826.
    • A.G. Bart, A.I. Korobeynikov (2007, in Russian), "On parameter estimation for special model of survival curves", In M.K. Chirkov (eds): Mathematical Models, Theory and Applications, 8, Saint Petersburg.
    • D.Yu. Madai, A.G. Bart, G.A. Ryzhak, A.I. Korobeynikov and S.K. Boyarova. (2006, In Russian), "Reparative Efficiency of 'Vilon' for Cure of Aged Patients with Generalized Chronic Periodontitis", Velikiy Novgorod.

    Theses:

    Miscellaneous (not refereed or lightly refereed papers, conferences contributions, etc.):

    • A.I. Korobeynikov (2009), "Comparison of Parameter Estimates for One Special Model of Survival Curves for Sample with Interval Censoring", PAGE 18, Abstr. 1614.
    • A.I. Korobeynikov, E.M. Baldin (2008, in Russian), "Data analysis with R: checking homogenity and goodness-of-fit hypotheses", LinuxFormat (Russian edition), 09 (109).
    • A.I. Korobeynikov, E.M. Baldin (2008, in Russian), "Data analysis with R: correlations and contingency tables", LinuxFormat (Russian edition), 10 (110).
    • A.I. Korobeynikov, E.M. Baldin (2008, in Russian), "Data analysis with R: GUI applications", LinuxFormat (Russian edition), 11 (111).
    • A.I. Korobeynikov, B.B. Bondarenko, N.P. Alexeyeva (2008, in Russian), "Estimation of critical periods of survival curves", In proceeding of "High-technology methods of diagnostics and cure of heart and blood illnesses". Arterial Hypertension, 14, No. 1, Appendix 1, P. 26.
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    autoref.pdf
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    Anton Korobeynikov,
    Apr 27, 2016, 12:16 AM
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    expcosext.pdf
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    Anton Korobeynikov,
    Oct 19, 2008, 3:18 PM
    v.1
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